Gbrowse on 4.0.2CD - Revision history

Eadz: Reverted edits by 203.158.221.227 (Talk); changed back to last version by Gmodhelp

2008-07-15T05:31:02Z

Reverted edits by 203.158.221.227 (Talk); changed back to last version by Gmodhelp

2008-07-12T04:59:14Z

c4toubocla

2007-10-04T10:49:04Z

Fixed GBrowse URL

2006-04-07T17:09:23Z

link to another download mirror ‎Code to install a basic gbrowse environment

2005-11-02T22:43:40Z

intermediate setup

2005-11-02T20:44:40Z

basic/intermediate setup ‎Code to install a basic gbrowse environment

2005-10-24T03:20:12Z

apache at startup ‎Code to install a basic gbrowse environment

2005-10-13T22:07:16Z

apache restart

2005-10-13T22:02:54Z

link back to gmod

2005-10-13T21:58:50Z

prereqs

← Older revision		Revision as of 05:31, 15 July 2008
Line 1:		Line 1:
−	~~nodoml~~
	The [http://www.gmod.org/GBrowse Generic Genome Browser], GBrowse, is a combination of database and interactive web page for manipulating and displaying annotations on genomes.		The [http://www.gmod.org/GBrowse Generic Genome Browser], GBrowse, is a combination of database and interactive web page for manipulating and displaying annotations on genomes.
	__TOC__		__TOC__

← Older revision		Revision as of 04:59, 12 July 2008
Line 1:		Line 1:
		+	nodoml
	The [http://www.gmod.org/GBrowse Generic Genome Browser], GBrowse, is a combination of database and interactive web page for manipulating and displaying annotations on genomes.		The [http://www.gmod.org/GBrowse Generic Genome Browser], GBrowse, is a combination of database and interactive web page for manipulating and displaying annotations on genomes.
	__TOC__		__TOC__

@@ Line 1: / Line 1: @@
-The [http://www.gmod.org/ggb/ Generic Genome Browser], gbrowse, is a combination of database and interactive web page for manipulating and displaying annotations on genomes.
+The [http://www.gmod.org/GBrowse Generic Genome Browser], GBrowse, is a combination of database and interactive web page for manipulating and displaying annotations on genomes.
 __TOC__
-= Code to install a basic gbrowse environment =
+= Code to install a basic GBrowse environment =
 Prerequisites: a persistent disk image of about 300 MB.  I used 500 MB just to be sure I had enough room for temporary files and the like.

@@ Line 19: / Line 19: @@
 cd /root
 wget 'http://umn.dl.sourceforge.net/sourceforge/gmod/Generic-Genome-Browser-1.62.tar.gz' || die "unable to wget" 3
 tar -xzvf Generic-Genome-Browser-1.62.tar.gz  || die "unable to untar" 4

@@ Line 1: / Line 1: @@
 The [http://www.gmod.org/ggb/ Generic Genome Browser], gbrowse, is a combination of database and interactive web page for manipulating and displaying annotations on genomes.
 = Code to install a basic gbrowse environment =
 Prerequisites: a persistent disk image of about 300 MB.  I used 500 MB just to be sure I had enough room for temporary files and the like.
 <pre><nowiki>#!/bin/bash
@@ Line 15: / Line 15: @@
 apt-get update || die "unable to apt-get" 1
-apt-get -y install libcgi-perl libgd-gd2-perl libdbi-perl \
+apt-get -y install perl-doc libcgi-perl libgd-gd2-perl libdbi-perl \
    libdbd-mysql-perl libmd5-perl libtext-shellwords-perl bioperl || die "unable to install " 2
@@ Line 37: / Line 37: @@
   update-rc.d apache start 40 2 3 4 5 . stop 60 0 1 6 .
-== Intermediate setup ==
+= Code to install an intermediate gbrowse environment =
 <pre><nowiki>#!/bin/bash
 </nowiki></pre>

@@ Line 25: / Line 25: @@
 make &&
 make install || die "unable to install gbrowse" 5
 )</nowiki></pre>

← Older revision		Revision as of 21:58, 13 October 2005
Line 1:		Line 1:
		+
		+	Prerequisits: a persistent disk image of about 300 MB. I used 500 MB just to be sure I had enough room for temporary files and the like.
		+
	Code to install a basic gbrowse environment		Code to install a basic gbrowse environment
	<pre><nowiki>#!/bin/bash		<pre><nowiki>#!/bin/bash